Publications by authors named "Abdulhalim I"

Surface-enhanced Raman scattering (SERS) is recognized as a powerful analytical method. However, its efficacy is hindered by considerable signal variability stemming from factors like surface irregularities, temporal instability of the substrate, interference with substrate signal, polarization sensitivity and uneven molecular distribution. To address these challenges, a new strategy is employed to enhance the reproducibility of SERS signals.

View Article and Find Full Text PDF

The present study aims to identify spermatogenesis in testicular seminiferous tubules (ST) and testicular tissue of adult normal and busulfan-treated mice utilizing PCA and Raman spectroscopy. Raman measurements were conducted on single tubules and testes samples from adult and immature mice, comparing them with those from busulfan-treated adult mice, with validation through histological examination. The analysis revealed a higher signal variability (30 %-40 % at the peaks), prompting scrutiny of individual Raman spectra as a means of spermatogenesis measurement.

View Article and Find Full Text PDF

Significance: Hyperspectral microscopy grants the ability to characterize unique properties of tissues based on their spectral fingerprint. The ability to label and measure multiple molecular probes simultaneously provides pathologists and oncologists with a powerful tool to enhance accurate diagnostic and prognostic decisions. As the pathological workload grows, having an objective tool that provides companion diagnostics is of immense importance.

View Article and Find Full Text PDF

In this work, we report a novel method for the label-free detection of cyanotoxin molecules based on a direct assay utilizing a graphene-modified surface plasmon resonance (SPR) aptasensor. Molecular dynamic simulation of the aptamer's interaction with cylindrospermopsin (CYN) reveals the strongest binding sites between C18-C26 pairs. To modify the SPR sensor, the wet transfer method of CVD monolayer graphene was used.

View Article and Find Full Text PDF

Unwelcomed biofilms are problematic in food industries, surgical devices, marine applications, and wastewater treatment plants, essentially everywhere where there is moisture. Very recently, label-free advanced sensors such as localized and extended surface plasmon resonance (SPR) have been explored as tools for monitoring biofilm formation. However, conventional noble metal SPR substrates suffer from low penetration depth (100-300 nm) into the dielectric medium above the surface, preventing the reliable detection of large entities of single or multi-layered cell assemblies like biofilms which can grow up to a few micrometers or more.

View Article and Find Full Text PDF

Ellipsometric Surface Plasmon Resonance (SPR) sensors are known for their relatively simple optical configuration compared to interferometric and optical heterodyne phase interrogation techniques. However, most of the previously explored ellipsometric SPR sensors based on intensity measurements are limited by their real-time applications because phase or polarization shifts are conducted serially. Here we present an ellipsometric SPR sensor based on a Kretschmann-Raether (KR) diverging beam configuration and a pixelated microgrid polarization camera.

View Article and Find Full Text PDF

Photonic metamaterials combined with liquid crystals (LCs) for tunability is a great niche for building miniature devices with high performance such as fast flat tunable lenses, tunable filters, and waveplates. Sub-wavelength or nano-grating surfaces are homogenized to uniaxial waveplates with negative birefringence of unique dispersion when the period is less than the wavelength by at least a few times. This uniaxial metasurface, combined with the LC layer, is shown to act as a tunable retardation achromatic waveplate with 8 μm thick LC layer operating over wide spectral and angular ranges, as compared to using two nematic liquid crystal (NLC) retarders of thicknesses on the order of 30-60 μm, when no metasurface is used.

View Article and Find Full Text PDF

It is shown that surface-enhanced Raman spectroscopy (SERS) can identify bacteria based on their genomic DNA composition, acting as a "sample-distinguishing marker". Successful spectral differentiation of bacterial species was accomplished with nanogold aggregates synthesized through single-step plasma reduction of the ionic gold-containing vapored precursor. A high enhancement factor (EF = 10) in truncated coupled plasmonic particulates allowed SERS-probing at nanogram sample quantities.

View Article and Find Full Text PDF

Hole transport layers (HTLs) with high conductivity, charge extraction ability, and carrier transport capability are highly important for fabricating perovskite solar cells (PSCs) with high power conversion efficiency and device stability. Low interfacial recombination between the HTL and perovskite absorber is also crucial to the device performance of PSCs. In this work, we developed a three-stage method to prepare NiO nanoflakes as the HTL in the inverted PSCs.

View Article and Find Full Text PDF

Nonlinear spatiotemporal systems are the basis for countless physical phenomena in such diverse fields as ecology, optics, electronics, and neuroscience. The canonical approach to unify models originating from different fields is the normal form description, which determines the generic dynamical aspects and different bifurcation scenarios. Realizing different types of dynamical systems via one experimental platform that enables continuous transition between normal forms through tuning accessible system parameters is, therefore, highly relevant.

View Article and Find Full Text PDF

Current phase unwrapping methods for non-scanning interferometry systems with one wavelength are not robust in the presence of high steps while still having a limited step height and range using two wavelengths configurations. Here, a new phase unwrapping method is proposed, allowing imaging steps with a height up to 15 times the wavelength using one wavelength or up to 1500 times using two wavelengths. It is based on a one-time computational model fitting of calibration measurements that allows to extract the degree of coherence and phase from two phase-shifted images per wavelength, perform phase unwrapping and accurately reconstruct the 3D structure of the sample.

View Article and Find Full Text PDF

Extraction of spectral information using liquid crystal (LC) retarders has recently become a topic of great interest because of its importance for creating hyper- and multispectral images in a compact and inexpensive way. However, this method of hyperspectral imaging requires thick LC-layer retarders (50 µm-100 µm and above) to obtain spectral modulation signals for reliable signal reconstruction. This makes the device extremely slow in the case of nematic LCs (NLCs), since the response time of NLCs increases proportionally to the square of the LC-layer thickness, which excludes fast dynamic processes monitoring.

View Article and Find Full Text PDF

Mycotoxins are widespread chemical entities in the agriculture and food industries that can induce cancer growth and immune deficiency, posing a serious health threat for humankind. These hazardous compounds are produced naturally by various molds (fungi) that contaminate different food products and can be detected in cereals, nuts, spices, and other food products. However, their detection, especially at minimally harmful concentrations, remains a serious analytical challenge.

View Article and Find Full Text PDF

Agriculture and food crops monitoring is extremely important for securing the food supply chain to human society. Here, we developed a highly specific detection method for monitoring pathogenic fungus Colletotrichum gloeosporioides using necrotrophic DNA biomarker as the recognition element and surface plasmon resonance (SPR) as transducing mechanism in the prism coupling configuration. The sensor shows its response for a wide range of concentrations from pM to μM of target DNA sequence using a complementary DNA probe immobilized on the sensor surface, which could detect concentrations as low as 7 pM.

View Article and Find Full Text PDF

Resonant-based sensors are attractive optical structures due to the easy detection of shifts in the resonance location in response to variations in the analyte refractive index (RI) in comparison to non-resonant-based sensors. In particular, due to the rapid progress of nanostructures fabrication methods, the manufacturing of subwavelength and nano-scale gratings in a large area and at a low cost has become possible. A comparative study is presented involving analysis and experimental work on several subwavelength and nanograting structures, highlighting their nano-scale features' high potential in biosensing applications, namely: (i) Thin dielectric grating on top of thin metal film (TDGTMF), which can support the excitation of extended surface plasmons (ESPs), guided mode resonance, or leaky mode; (ii) reflecting grating for conventional ESP resonance (ESPR) and cavity modes (CMs) excitation; (iii) thick dielectric resonant subwavelength grating exhibiting guided mode resonance (GMR) without a waveguide layer.

View Article and Find Full Text PDF

The proliferation and transmission of viruses has become a threat to worldwide biosecurity, as exemplified by the current COVID-19 pandemic. Early diagnosis of viral infection and disease control have always been critical. Virus detection can be achieved based on various plasmonic phenomena, including propagating surface plasmon resonance (SPR), localized SPR, surface-enhanced Raman scattering, surface-enhanced fluorescence and surface-enhanced infrared absorption spectroscopy.

View Article and Find Full Text PDF

Surface patterning is a popular approach to produce photonic metasurfaces that are tunable when electro-optic, thermo-optic, or magneto-optic materials are used. Vanadium oxides (VO) are well-known phase change materials with many applications, especially when used as tunable metamaterial photonic structures. Particularly, VO is a well-known thermochromic material for its near-room-temperature phase transition from the insulating to the metallic state.

View Article and Find Full Text PDF

Spectroscopic ellipsometer (SE) is an essential optical metrology tool commonly used to characterize thin films and monitor fabrication processes. However, it relies on mechanical rotation of a polarizer or a photo-elastic phase modulator which are limited in speed and prone to errors when handling dynamic processes. The constant trend of micro-electronics dimensions shrinkage and increase of the wafer area necessitates faster and more accurate tools.

View Article and Find Full Text PDF

Surface plasmon resonance (SPR) biosensors are often used in the detection of solid, liquid or gaseous samples in diagnostics, pharmaceutics and military defense. Plasmon waveguide resonance (PWR) mode is obtained when a dielectric waveguide layer is added to the metal film. In this study, a self-referenced PWR (SRPWR) silicon dioxide (SiO) chip was examined.

View Article and Find Full Text PDF

In this paper, we present a new hyperspectral compact camera which is designed to have high spatial and spectral resolutions, to be vibrations tolerant, and to achieve state-of-the-art high optical throughput values compared to existing nanosatellite hyperspectral imaging payloads with space heritage. These properties make it perfect for airborne and spaceborne remote sensing tasks. The camera has both hyperspectral and panchromatic imaging capabilities, achieved by employing a wedge-shaped liquid crystal cell together with computational image processing.

View Article and Find Full Text PDF

Low solar light absorption and high electron-hole pair recombination are still the main challenges for solar energy conversion. Here, we design a plasmonic nanoparticle (NP)-film with a unique structure combining the advantages of a Au NP and film, which exhibits strong broadband absorption from the visible to near-infrared (NIR) wavelength range. In addition, the high density of sub-1 nm inter-particle gaps in the Au NP-film supports electromagnetic field enhancement of several orders of magnitude that greatly promotes the generation and separation of electron-hole pairs.

View Article and Find Full Text PDF

In this work, we apply for the first time a machine learning approach to design and optimize VO based nanostructured smart window performance. An artificial neural network was trained to find the relationship between VO smart window structural parameters and performance metrics-luminous transmittance (T) and solar modulation (ΔT), calculated by first-principle electromagnetic simulations (FDTD method). Once training was accomplished, the combination of optimal T and ΔT was found by applying classical trust region algorithm on the trained network.

View Article and Find Full Text PDF

Liquid crystal phase retarders are utilized by photonic devices and imaging systems for various applications, such as tunable filtering, light modulation, polarimetric imaging, remote sensing and quality inspection. Due to technical difficulties in the manufacturing process, these phase retarders may suffer from spatial non-uniformities, which degrade the performance of the systems. These non-uniformities can be characterized by measuring the spectral transmission at each voltage and each point on the liquid crystal cell, which is time consuming.

View Article and Find Full Text PDF

Dielectric grating-based sensors are usually based on the guided mode resonance (GMR) obtained using a thin planar waveguide layer (PWL) adjacent to a thin subwavelength grating layer. In this work, we present a detailed investigation of thick subwavelength dielectric grating structures that exhibit reflection resonances above a certain thickness without the need for the waveguide layer, showing great potential for applications in biosensing and tunable filtering. Analytic and numerical results are thoroughly discussed, as well as an experimental demonstration of the structure as a chemical sensor in the SWIR (short wave infrared) spectral range (1200-1800 nm).

View Article and Find Full Text PDF