Publications by authors named "Aaron C Beekman"

Transcriptome analysis was used to investigate the global stress response of the gram-positive bacterium Bacillus subtilis caused by overproduction of the well-secreted AmyQ alpha-amylase from Bacillus amyloliquefaciens. Analyses of the control and overproducing strains were carried out at the end of exponential growth and in stationary phase, when protein secretion from B. subtilis is optimal.

View Article and Find Full Text PDF

The in vitro cell suspension culture of Linum flavum is able to convert high amounts of the 2,7'-cyclolignan deoxypodophyllotoxin into 6-methoxypodophyllotoxin 7- O-glucoside. We studied this conversion in detail by monitoring the intermediates and side-products after feeding different concentrations of deoxypodophyllotoxin. At a low concentration (0.

View Article and Find Full Text PDF
Article Synopsis
  • Bacterial genomes, like that of Bacillus subtilis, contain 250 to 500 essential genes, while many nonessential genes are thought to be acquired through evolutionary adaptations.
  • Approximately 47% of B. subtilis's 4,100 genes are part of paralogous families, indicating that essential gene functions may outnumber the essential genes themselves.
  • Researchers conducted a genome reconstruction by deleting certain prophages and gene clusters, achieving a 7.7% reduction in the genome, which was analyzed for various phenotypes, demonstrating that genome engineering can help optimize Bacillus for specific functions.
View Article and Find Full Text PDF