Publications by authors named "Aaron Beattie"

Three Hordeum spontaneum-derived resistances (referred to as 145L2, 41T1 and 40Y5) have demonstrated long-term effectiveness against barley scald, caused by Rhynchosporium commune, in western Canada. Genetic mapping of these resistances in three populations, and the use of five barley genome assemblies, revealed they co-located to a narrowly defined 0.58-1.

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New selection methods, using trait-specific markers (marker-assisted selection (MAS)) and/or genome-wide markers (genomic selection (GS)), are becoming increasingly widespread in breeding programs. This new era requires innovative and cost-efficient solutions for genotyping. Reduction in sequencing cost has enhanced the use of high-throughput low-cost genotyping methods such as genotyping-by-sequencing (GBS) for genome-wide single-nucleotide polymorphism (SNP) profiling in large breeding populations.

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The effect of genotype and environment on oat protein composition was analyzed through size exclusion-high-performance liquid chromatography (SE-HPLC) and liquid chromatography-mass spectrometry (LC-MS) to characterize oat protein isolate (OPI) extracted from three genotypes grown at three locations in the Canadian Prairies. SE-HPLC identified four fractions in OPI, including polymeric globulins, avenins, glutelins, and albumins, and smaller proteins. The protein composition was dependent on the environment, rather than the genotype.

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Low-temperature stress (LTS) is among the major abiotic stresses affecting the geographical distribution and productivity of the most important crops. Understanding the genetic basis of photosynthetic variation under cold stress is necessary for developing more climate-resilient barley cultivars. To that end, we investigated the ability of chlorophyll fluorescence parameters (FF and FF) to respond to changes in the maximum quantum yield of Photosystem II photochemistry as an indicator of photosynthetic energy.

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Barley is considered as a foundation of the brewing and malting industry. Varieties with superior malt quality traits are required for efficient brewing and distillation processes. Among these, the Diastatic Power (DP), wort-Viscosity (VIS), β-glucan content (BG), Malt Extract (ME) and Alpha-Amylase (AA) are controlled by several genes linked to numerous quantitative trait loci (QTL), identified for barley malting quality.

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Studying the population structure and genetic diversity of historical datasets is a proposed use for association analysis. This is particularly important when the dataset contains traits that are time-consuming or costly to measure. A set of 96 elite barley genotypes, developed from eight breeding programs of the Western Canadian Cooperative Trials were used in the current study.

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Article Synopsis
  • Barley loose smut is largely controlled by a specific gene, but certain inoculation methods can lead to poor seed quality and germination issues, especially in carrier and susceptible genotypes.
  • Research compared a carrier strain (TR11698) and a susceptible strain (CDC Austenson), finding that lower inoculum concentrations improved seed traits and increased infection in the susceptible strain, while the carrier showed no infection but still had low germination rates.
  • The study suggests that lowering inoculum levels can enhance seed appearance and germination in susceptible plants, while the carrier's seedling issues indicate a resistance mechanism, with increased abscisic acid levels potentially aiding in pathogen survival.
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Loose smut (LS) disease is a serious problem that affects barley yield. Breeding of resistant cultivars and identifying new genes controlling LS has received very little attention. Therefore, it is important to understand the genetic basis of LS control in order to genetically improve LS resistance.

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Objective: To determine the incidence of cognitive dependence in adults who are physically independent at discharge from acute traumatic brain injury (TBI) rehabilitation.

Design: Analysis of historical clinical and demographic data obtained from inpatient stay.

Setting: Inpatient rehabilitation unit in a large, metropolitan university hospital.

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As genotyping-by-sequencing (GBS) is widely used in barley genetic studies, the translation of the physical position of GBS-derived SNPs into accurate genetic positions has become relevant. The main aim of this study was to develop a high-resolution consensus linkage map based on GBS-derived SNPs. The construction of this integrated map involved 11 bi-parental populations composed of 3743 segregating progenies.

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  • Most oat grains for human consumption need to go through de-hulling with minimal breakage and waste, making certain traits crucial for milling quality, including uniform grain size and high groat-to-hull ratio.
  • This study aimed to identify the genetic components (quantitative trait loci or QTL) that affect these milling quality traits by analyzing a diverse panel of 501 elite and foundational spring oat lines over 13 location years.
  • Researchers discovered 57 QTL linked to milling traits, particularly identifying Qkernel.CORE.4D on chromosome 4D as a key influence on mean levels of all traits examined.
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Various types of malt quality profiles have been investigated to benefit the North American brewing industry. Herein, we report the development and brewing quality of the hulled, two-row malting barley ( L.) variety 'CDC Goldstar' lacking lipoxygenase-1 (LOX-1-less).

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Barley (Hordeum vulgare L.) is one of the most important global crops. The six-row barley cultivar Morex reference genome has been used by the barley research community worldwide.

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Article Synopsis
  • Stem rust is a significant disease affecting cultivated oats, primarily controlled in North America through host resistance from a limited number of resistance genes.
  • Researchers focused on a specific resistance gene to develop high-density genetic maps and to create efficient DNA markers for selecting resistant oat varieties.
  • Their findings included identifying key markers linked to the resistance gene, which were successfully converted into KASP assays that can accurately predict the presence of the resistance gene in various oat lines and cultivars.
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  • Crown rust, a major disease affecting oats caused by the fungus f. sp. Eriks., leads to significant yield losses and is controlled in part by a gene-for-gene interaction that oat breeders utilize.
  • The study aimed to map a specific resistance gene in two independent oat populations and identify SNP markers to predict its presence in breeding material.
  • Results showed the resistance gene mapped to linkage group Mrg11 with specific SNP markers, allowing for the development of PCR assays to accurately predict resistance status and improve oat breeding programs through marker-assisted selection.
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SNP loci linked to the crown rust resistance gene Pc98 were identified by linkage analysis and KASP assays were developed for marker-assisted selection in breeding programs. Crown rust is among the most damaging diseases of oat and is caused by Puccinia coronata var. avenae f.

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Article Synopsis
  • * Pg13 is crucial for stem rust resistance in North American oat cultivars and will aid in routine selection practices like gene pyramiding and backcrosses.
  • * High-density linkage maps and genome-wide associations confirmed Pg13's location at approximately 67.7 cM on linkage group Mrg18, coinciding with specific translocation breakpoints and other resistance genes, with reliable KASP assays created for breeding use.
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The aim of this study was to determine the potential for accumulation of deoxynivalenol (DON) in yellow mealworm larvae () reared on high DON -infected wheat and investigate the effects on production, survival and nutritional traits. Wheat containing 200 μg/kg DON was used as the control diet. A different source of wheat was sorted into six fractions and mixed to obtain low (2000 μg/kg), medium (10,000 μg/kg) and high (12,000 μg/kg) levels of DON.

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Molecular mapping of crown rust resistance genes is important to effectively utilize these genes and improve breeding efficiency through marker-assisted selection. is a major race-specific crown rust resistance gene initially identified in the wild hexaploid oat in the early 1970s. This gene was transferred to cultivated oat () and has been used as a differential for identification of crown rust races since 1974.

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The objectives of this study were to evaluate the effects of pretreating dairy cow rations with a fibrolytic enzyme derived from Trichoderma reesei (FETR; mixture of xylanase and cellulase; AB Vista, Wiltshire, UK) on lactation performance, digestibility, and feeding behavior in response to feeding a barley silage-based diet. Before starting the dairy trial, in vitro incubations were conducted to determine whether the addition of FETR would have an effect on these animal performance characteristics when applied to a barley silage-based diet for dairy cows. The dairy trial was performed using 8 Holstein dairy cows.

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Changes in whole-grain chemical composition can affect the site of nutrient digestion, which may alter substrate availability and gut microbiota composition. This study elucidated the function of whole-grain fermentable fiber composition on ileal substrate flow, hindgut substrate availability, and subsequent gut microbial profiles in pigs. Five whole grains-) high-fermentability, high-β-glucan hull-less barley (HFB); ) high-fermentability, high-amylose hull-less barley (HFA); ) moderate-fermentability hull-less barley (MFB); ) low-fermentability hulled barley (LFB); or ) low-fermentability hard red spring wheat (LFW)-were included at 800 g/kg into diets fed to ileal-cannulated growing pigs for 9 d in a 6 (periods) × 5 (diets) Youden square.

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  • Two new peroxygenases, AsPXG2 and AsPXG3, were discovered in oat for producing epoxy fatty acids, with AsPXG3 showing high activity and AsPXG2 exhibiting minimal activity.
  • Both peroxygenases have distinct amino acid sequences but include key features like a transmembrane domain and conserved motifs for heme and calcium binding.
  • Site-directed mutagenesis studies on AsPXG3 revealed that altering specific conserved residues, especially histidines crucial for heme binding, significantly impacts enzymatic activity and may influence the catalytic pocket's functionality.
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  • 635 oat lines and 4561 SNP loci were analyzed to understand population structure, linkage disequilibrium (LD), and the relationship between genotypes and heading date.
  • The analysis revealed that 25.3% of genetic variation could be explained by the first five principal components, but no clear structured population was found, although clustering indicated differences between spring oats and southern U.S. origins.
  • Linkage disequilibrium was observed to decay slower in southern oat lines compared to spring oat lines, particularly highlighting an interesting case on linkage group Mrg28, and several linkage groups were consistently associated with heading date across different environments.
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