Cells are among the most dynamic entities, constantly undergoing various processes such as growth, division, movement, and interaction with other cells as well as the environment. Time-lapse microscopy is central to capturing these dynamic behaviors, providing detailed temporal and spatial information that allows biologists to observe and analyze cellular activities in real-time. The analysis of time-lapse microscopy data relies on two fundamental tasks: cell segmentation and cell tracking.
View Article and Find Full Text PDFReducing the negative impact of environmental and stressful factors is a crucial step in achieving sustainable aquaculture. Therefore, a study was aimed at evaluating the impacts of Coenzyme Q (CoQ) supplementation on growth, relative gene expression of Growth Hormone (GH) and Insulin-like growth factor-1 (IGF-1), liver and kidney histopathology against stress induced by ammonia in Rainbow trout (Oncorhynchus mykiss). The fish were given feed containing different levels of CoQ for 8 weeks: Control - CoQ 0%, G1 - CoQ 0.
View Article and Find Full Text PDFDeep learning is transforming bioimage analysis, but its application in single-cell segmentation is limited by the lack of large, diverse annotated datasets. We addressed this by introducing a CycleGAN-based architecture, cGAN-Seg, that enhances the training of cell segmentation models with limited annotated datasets. During training, cGAN-Seg generates annotated synthetic phase-contrast or fluorescent images with morphological details and nuances closely mimicking real images.
View Article and Find Full Text PDFEmbryonic stem cells (ESCs) can self-organize into developmental patterns with spatial organization and molecular similarity to that of early embryonic stages. This self-organization of ESCs requires transmission of signaling cues, via addition of small molecule chemicals or recombinant proteins, to induce distinct embryonic cellular fates and subsequent assembly into structures that can mimic aspects of early embryonic development. During natural embryonic development, different embryonic cell types co-develop together, where each cell type expresses specific fate-inducing transcription factors through activation of non-coding regulatory elements and interactions with neighboring cells.
View Article and Find Full Text PDFThe advancement of nanotechnology and the widespread use of nanoparticles (NPs) in various industries have highlighted the importance of studying the potential harmful effects of nanomaterials on organisms. This study aimed to evaluate the lethal toxicity thresholds of Copper Oxide Nanoparticles (CuO-NPs). The investigation focused on examining the sub-lethal toxicity effects of CuO-NPs on blood parameters, as well as their influence on the gill tissue and liver of goldfish (Carassius auratus).
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