Publications by authors named "A S Bogomolov"

Primary open-angle glaucoma (POAG) is the most common form of glaucoma. This condition leads to optic nerve degeneration and eventually to blindness. Tobacco smoking, alcohol consumption, fast-food diets, obesity, heavy weight lifting, high-intensity physical exercises, and many other bad habits are lifestyle-related risk factors for POAG.

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Article Synopsis
  • - Efficient motif discovery from ChIP-seq data relies heavily on selecting the right background nucleotide sequences, influencing the identification of target transcription factors and minimizing false positives from common motifs like simple sequence repeats.
  • - A comparison of two methods for generating background sequences—synthetic (shuffling nucleotides) and genomic (selecting from the reference genome)—showed that the genomic approach yielded better results in detecting known motifs and reducing non-specific motifs.
  • - The study implemented a web service called AntiNoise to facilitate the extraction of genomic background sequences for various eukaryotic genomes, proving particularly effective for plants when compared to mammals.
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In plant hormone signaling, transcription factor regulatory networks (TFRNs), which link the master transcription factors to the biological processes under their control, remain insufficiently characterized despite their crucial function. Here, we identify a TFRN involved in the response to the key plant hormone auxin and define its impact on auxin-driven biological processes. To reconstruct the TFRN, we developed a three-step procedure, which is based on the integrated analysis of differentially expressed gene lists and a representative collection of transcription factor binding profiles.

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The process of domestication, despite its short duration as it compared with the time scale of the natural evolutionary process, has caused rapid and substantial changes in the phenotype of domestic animal species. Nonetheless, the genetic mechanisms underlying these changes remain poorly understood. The present study deals with an analysis of the transcriptomes from four brain regions of gray rats (), serving as an experimental model object of domestication.

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A fiber probe has been developed that enables simultaneous acquisition of mid-infrared (MIR) and Raman spectra in the region of 3100-2600 cm. Multimodal measurement is based on a proposed ZrO crystal design at the tip of an attenuated total reflection (ATR) probe. Mid-infrared ATR spectra are obtained through a pair of chalcogenide infrared (CIR) fibers mounted at the base of the crystal.

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