Publications by authors named "A Merve Kocabas"

Isolating RNA from single nuclei is essential for single-cell gene expression analysis, yet obtaining high-quality RNA is challenging. We present a protocol to enhance RNA yield and quality from mouse brain nuclei. Key steps include brain dissection, thawing, homogenization, and centrifugation-based isolation.

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Background: Duchenne muscular dystrophy (DMD)-related cardiomyopathy is associated with hemodynamic and conduction abnormalities and begins at an early age with subtle symptoms.

Methods: The study population included 55 patients with DMD and 54 healthy controls. We compared electrocardiogram (ECG), conventional echocardiography, and tissue Doppler imaging (TDI) assessments between patients with DMD and healthy controls.

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Article Synopsis
  • Quantitative muscle magnetic resonance imaging (qMRI) and diffusion tensor imaging (DTI) are effective for studying muscle injuries and structure, but their long-term reliability had not been well-tested.
  • A study with 12 healthy volunteers performed five MRI sessions over 1.5 years to evaluate the consistency of qMRI parameters in lower leg muscles.
  • Results indicated high reproducibility with low variability in measurements, suggesting qMRI is a reliable method for assessing muscle characteristics over time.
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The control of thermal radiation by shaping its spatial and spectral emission characteristics plays a key role in many areas of science and engineering. Conventional approaches to tailoring thermal emission using metamaterials are hampered both by the limited spatial resolution of the required subwavelength material structures and by the materials' strong absorption in the infrared. In this work, we demonstrate an approach based on the concept of topology.

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A vexing problem in mitochondrial medicine is our limited capacity to evaluate the extent of brain disease in vivo. This limitation has hindered our understanding of the mechanisms that underlie the imaging phenotype in the brain of patients with mitochondrial diseases and our capacity to identify new biomarkers and therapeutic targets. Using comprehensive imaging, we analyzed the metabolic network that drives the brain structural and metabolic features of a mouse model of pyruvate dehydrogenase deficiency (PDHD).

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