Publications by authors named "A Legreve"

Article Synopsis
  • The study of taxonomic composition has shifted from traditional methods to advanced DNA sequencing techniques, particularly metabarcoding, which uses targeted genome portions for high-throughput sequencing.
  • Recent innovations in Oxford Nanopore Technologies have made sequencing more accessible and effective while presenting specific errors and a need for refined bioinformatics tools to handle long-read data.
  • PRONAME, a new open-source pipeline designed for Nanopore data, enhances sequence accuracy and supports custom database integration, achieving over 99.5% accuracy in tests, thus providing a reliable method for analyzing complex biological communities.
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While humic substances (HS) are recognized for their role in enhancing plant growth under abiotic stress by modulating hormonal and redox metabolisms, a key question remains: how do HS influence the microbiota associated with plants? This study hypothesizes that the effects of HS extend beyond plant physiology, impacting the plant-associated bacterial community. To explore this, we investigated the combined and individual impacts of HS and osmotic stress on tomato plant physiology and root endophytic communities. Tomatoes were grown within a sterile hydroponic system, which allowed the experiment to focus on seed-transmitted endophytic bacteria.

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Background: The hemibiotrophic fungus Zymoseptoria tritici causing Septoria tritici blotch (STB), is a devastating foliar pathogen of wheat worldwide. A common group of fungicides used to control STB are the demethylation inhibitors (DMIs). DMI fungicides restrict fungal growth by inhibiting the sterol 14-α-demethylase, a protein encoded by CYP51 gene and essential for maintaining fungal cell permeability.

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In the prospect of novel potential biocontrol agents, a new strain BDI-IS1 belonging to the recently described Bacillus nakamurai was selected for its strong in vitro antimicrobial activities against a range of bacterial and fungal phytopathogens. Genome mining coupled with metabolomics revealed that BDI-IS1 produces multiple non-ribosomal secondary metabolites including surfactin, iturin A, bacillaene, bacillibactin and bacilysin, together with some some ribosomally-synthesized and post-translationally modified peptides (RiPPs) such as plantazolicin, and potentially amylocyclicin, bacinapeptin and LCI. Reverse genetics further showed the specific involvement of some of these compounds in the antagonistic activity of the strain.

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Agricultural productivity in the Great Lakes Countries of Central Africa, including Burundi, Rwanda, and the Democratic Republic of Congo, is affected by a wide range of diseases and pests which are mainly controlled by chemical pesticides. However, more than 30% of the pesticides used in the region are banned in European Union due to their high toxicity. Globally available safe and eco-friendly biological alternatives to chemicals are virtually non-existent in the region.

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