Publications by authors named "A Bothe"

Ribosomes scanning from the mRNA 5' cap to the start codon may initiate at upstream open reading frames (uORFs), decreasing protein biosynthesis. Termination at a uORF can lead to re-initiation, where 40S subunits resume scanning and initiate another translation event downstream. The noncanonical translation factors MCTS1-DENR participate in re-initiation at specific uORFs, but knowledge of other trans-acting factors or uORF features influencing re-initiation is limited.

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Eukaryotic ribosome assembly is an intricate process that involves four ribosomal RNAs, 80 ribosomal proteins, and over 200 biogenesis factors that take part in numerous interdependent steps. This complexity creates a large genetic space in which pathogenic mutations can occur. Dead-end ribosome intermediates that result from biogenesis errors are rapidly degraded, affirming the existence of quality control pathway(s) that monitor ribosome assembly.

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In vitro translation is an important method for studying fundamental aspects of co- and post-translational gene regulation, as well as for protein expression in the laboratory and on an industrial scale. Here, by re-examining and improving a human in vitro translation system (HITS), we were able to develop a minimal system where only four components are needed to supplement human cell lysates. Functional characterization of our improved HITS revealed the synergistic effect of mRNA capping and polyadenylation.

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Article Synopsis
  • This study explores how different average molecular sizes of poly(ethylene glycol) (PEG) affect the micelle formation of n-alkyl-β-D-maltoside detergents, which are important for studying the crystallization of the photosystem II pigment-protein complex.
  • * PEG increases the critical micelle concentration (CMC) of these detergents in a crystallization buffer, showing a linear relationship between micelle formation free energy and the concentration of oxyethylene units, regardless of PEG's molecular weight.
  • * The findings suggest that the interaction between PEG and detergent monomers is key to understanding changes in CMC, with implications for solubilizing and crystallizing protein-detergent complexes.*
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Serine/threonine kinases called cyclin-dependent kinases (CDKs) interact with cyclins and CDK inhibitors (CKIs) to control the catalytic activity. CDKs are essential controllers of RNA transcription and cell cycle advancement. The ubiquitous overactivity of the cell cycle CDKs is caused by a number of genetic and epigenetic processes in human cancer, and their suppression can result in both cell cycle arrest and apoptosis.

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