Publications by authors named "BERNHEIM"

Heat exposure in outdoor work environments poses risks to worker health and productivity. Engineering solutions like cool surfaces that increase surface albedo and reduce temperatures may help mitigate these impacts. We conducted detailed micrometeorological modeling to analyze surface characteristics and heat exposure for outdoor workers at San Francisco International Airport (SFO) under current conditions and three hypothetical albedo-increase scenarios.

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Transposase genes are ubiquitous in all domains of life and provide a rich reservoir for the evolution of novel protein functions. Here we report deep evolutionary links between bacterial IS110-family transposases, which catalyse RNA-guided DNA recombination using bridge RNAs, and archaeal/eukaryotic Nop5-family proteins, which promote RNA-guided RNA 2'-O-methylation using C/D-box snoRNAs. On the basis of conservation of protein sequence, domain architecture, three-dimensional structure and non-coding RNA features, alongside phylogenetic analyses, we propose that programmable RNA modification emerged through the exaptation of components derived from IS110-like transposons.

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Escherichia coli is an increasingly antibiotic-resistant opportunistic pathogen. Few data are available on its ecological and evolutionary dynamics in its primary commensal niche, the vertebrate gut. Using Illumina and/or Nanopore technologies, we sequenced whole genomes of 210 E.

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The co-evolution of prokaryotes, phages and mobile genetic elements (MGEs) has driven the diversification of defense and anti-defense systems alike. Anti-defense proteins have diverse functional domains, sequences and are typically small, creating a challenge to detect anti-defense homologs across prokaryotic and phage genomes. To date, no tools comprehensively annotate anti-defense proteins within a desired sequence.

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Predicting bacteriophage infection of specific bacterial strains promises advancements in phage therapy and microbial ecology. Whether the dynamics of well-established phage-host model systems generalize to the wide diversity of microbes is currently unknown. Here we show that we could accurately predict the outcomes of phage-bacteria interactions at the strain level in natural isolates from the genus Escherichia using only genomic data (area under the receiver operating characteristic curve (AUROC) of 86%).

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Article Synopsis
  • The co-evolution of prokaryotes, phages, and mobile genetic elements has led to the development of various defense and anti-defense systems, which are challenging to detect due to the diverse nature of anti-defense proteins.
  • The newly developed "AntiDefenseFinder" is an open-source tool that identifies 156 anti-defense systems across prokaryotic genomes and has revealed 47,981 systems in total, highlighting the occurrence of "anti-defense islands" in some cases.
  • The study indicates that many anti-defense systems are located in specific mobile genetic elements, with notable findings on the Apyc1 protein, which likely started in bacteria and has been adapted by phages to bypass bacterial defenses.
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  • Understanding eukaryotic immune systems is crucial for both human health and ecosystem comprehension, particularly with recent findings on antiphage systems and their origins from prokaryotes.
  • This study employs a phylogenetic approach to investigate the presence of bacterial antiphage system homologs in eukaryotes, revealing that many immune proteins in eukaryotes share similarities with these bacterial systems.
  • Key findings include the evolutionary connection of eukaryotic piRNA pathway proteins to the antiphage system Mokosh and the antiviral roles of certain human genes (GIMAPs, FHAD1, and CTRC) associated with prokaryotic defense systems.
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  • * It included over 2,300 patients, with a focus on comparing outcomes based on how many ECV procedures each patient had undergone.
  • * The results indicated no significant link between the number of ECVs and either existing or new brain infarcts, nor with clinical issues like strokes, hospitalizations for heart failure, or mortality.
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Viruses compete with each other for limited cellular resources, and some deliver defence mechanisms that protect the host from competing genetic parasites. The phage antirestriction induced system (PARIS) is a defence system, often encoded in viral genomes, that is composed of a 55 kDa ABC ATPase (AriA) and a 35 kDa TOPRIM nuclease (AriB). However, the mechanism by which AriA and AriB function in phage defence is unknown.

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Immune defence mechanisms exist across the tree of life in such diversity that prokaryotic antiviral responses have historically been considered unrelated to eukaryotic immunity. Mechanisms of defence in divergent eukaryotes were similarly believed to be largely clade specific. However, recent data indicate that a subset of modules (domains and proteins) from prokaryote defence systems are conserved in eukaryotes and populate many stages of innate immune pathways.

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  • Evolutionary interactions between cells and viruses lead to the rapid development of antiviral genes in various organisms, highlighting the shared immune responses in prokaryotes (like bacteria) and eukaryotes (like plants and animals).
  • The study focuses on viperins, a family of immune genes found across different life forms, revealing their ancient origin and evolutionary adaptations within eukaryotes.
  • Viperins produce antiviral compounds and have diversified through changes in their gene structure and collaboration with other genes, providing insights into the evolution of immune systems across all life forms.
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  • Transposase genes are found across all life forms and play a vital role in the evolution of new protein functions.
  • Recent research highlights a connection between bacterial IS110 transposases, which assist in RNA-guided DNA recombination, and Nop5-family proteins in archaea/eukaryotes that aid in RNA modification.
  • The study suggests that RNA modification methods likely evolved from transposon components, similar to the origins of CRISPR systems, emphasizing the importance of transposable elements in developing intricate biological processes.
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Background: Vasospastic angina (VSA) and spontaneous coronary artery dissection (SCAD) are challenging causes of non-atherosclerotic acute coronary syndromes (ACS). Here, we report a unique ACS case with coexisting VSA and SCAD, highlighting specific strategies in diagnosis and management of these poorly studied conditions.

Case Summary: A woman in her mid-60s with a history of suspected microvascular angina and no atherosclerosis in a previously performed coronary computed tomography angiography presented with worsening chest pain.

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Psychiatric nurses who work with people who are involved with the justice system experience ethical and moral tension arising from their dual role (care and control). This is known to significantly affect the development of a therapeutic relationship between nurses and patients. (a) better understand how justice system involvement affects people living with mental disorders and the nurses who work with them; (b) explore the influence of judiciarization on social interactions between these actors.

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  • The study aimed to investigate whether the quality of hospitals before the pandemic influenced the survival rates of Medicare patients hospitalized with COVID-19.
  • Researchers analyzed in-hospital and 30-day mortality rates in relation to pre-pandemic hospital quality, finding that better-rated hospitals had significantly lower mortality rates.
  • Results showed that patients in lower-rated hospitals, specifically those with one star, faced much higher odds of dying either during their hospital stay or within 30 days of discharge compared to those in five-star hospitals.
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Background: Limitations in the quality of race-and-ethnicity information in Medicare's data systems constrain efforts to assess disparities in care among older Americans. Using demographic information from standardized patient assessments may be an efficient way to enhance the accuracy and completeness of race-and-ethnicity information in Medicare's data systems, but it is critical to first establish the accuracy of these data as they may be prone to inaccurate observer-reported or third-party-based information. This study evaluates the accuracy of patient-level race-and-ethnicity information included in the Outcome and Assessment Information Set (OASIS) submitted by home health agencies.

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  • Viruses compete for cellular resources, and some produce defense systems like PARIS, which consists of two proteins: AriA (an ATPase) and AriB (a nuclease).
  • The study reveals that AriA and AriB form a large immune complex, where AriA shapes a scaffold for AriB, enabling it to detect and respond to foreign proteins.
  • Phage T5 can evade this defense by using a tRNA variant that avoids cleavage by PARIS, illustrating a co-evolutionary struggle between viruses and host defenses.
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Importance: Equity is an essential domain of health care quality. The Centers for Medicare & Medicaid Services (CMS) developed 2 Disparity Methods that together assess equity in clinical outcomes.

Objectives: To define a measure of equitable readmissions; identify hospitals with equitable readmissions by insurance (dual eligible vs non-dual eligible) or patient race (Black vs White); and compare hospitals with and without equitable readmissions by hospital characteristics and performance on accountability measures (quality, cost, and value).

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Objectives: The purpose of this study is to describe the long-term results of the 'réparation à l'étage ventriculaire' (REV) technique for double-outlet right ventricle and transposition of the great arteries (TGA) with pulmonary stenosis (PS).

Methods: Between 1980 and 2021, 157 patients underwent a REV procedure (median age and weight: 20.8 months and 7.

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Viruses are parasites that infect all living organisms, and bacteria are no exception. To defend themselves against their viruses (phages), bacteria have developed numerous and sophisticated defense mechanisms, our understanding of which is rapidly growing. In the 2000s, only a handful of mechanisms were known and only two of them seemed to be found in most bacteria.

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The involvement of people living with mental illness in the judicial process, whether in civil or criminal justice system, is a growing phenomenon that can be defined as judiciarization. Such over-representation of people with mental illness in the justice system is related to several issues, including stigma, experienced coercion, loss of autonomy and social isolation. To explore this understudied phenomenon in nursing research, we conducted a study to better understand how judiciarization affects people living with mental illness.

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  • The study aimed to assess how diagnostic cardiovascular procedure volumes rebounded in the U.S. and abroad during the year after COVID-19 hit, relying on data from 669 facilities worldwide.
  • In the early pandemic (April 2020), procedure volumes dropped significantly but showed a better recovery in U.S. facilities by April 2021 compared to non-U.S. facilities, although high-income non-U.S. countries showed similar recovery rates as the U.S.
  • Regional variations within the U.S. were noted, with the Midwest having the highest recovery rate, but no specific factors were found to predict recovery levels from the initial drop in procedure volumes.
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